HsaEX6097383 @ hg19
Exon Skipping
Gene
ENSG00000039139 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:2950]
Coordinates
chr5:13814714-13820608:-
Coord C1 exon
chr5:13820455-13820608
Coord A exon
chr5:13817657-13817803
Coord C2 exon
chr5:13814714-13814955
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTGGATTTACTTGGTATAGATT
3' ss Score
2.44
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GTTGAAGAAGCTGGTTTAATCAACCATCCTCCTTGGAAACTGAAGGTCATCCAGCTATTCGAAACGCAGAGAGTGCGACATGGGATGATGACTCTGGGGCCCAGTGGGGCTGGGAAGACCACCTGCATCCACACCTTGATGAGAGCCATGACAG
Seq A exon
ATTGTGGAAAACCACATCGGGAAATGAGGATGAATCCCAAAGCGATTACTGCCCCACAGATGTTTGGTCGGCTGGACGTTGCCACAAATGACTGGACTGATGGGATATTTTCTACGCTTTGGAGGAAAACATTAAGAGCAAAGAAAG
Seq C2 exon
GGGAACATATCTGGATAATTCTTGATGGTCCAGTAGATGCCATCTGGATTGAAAATCTGAATTCTGTTTTGGATGATAACAAAACTCTAACCCTTGCCAATGGTGATCGGATTCCCATGGCTCCAAACTGCAAGATCATTTTCGAGCCTCATAACATTGACAATGCTTCTCCTGCCACCGTCTCAAGAAATGGAATGGTTTTCATGAGCTCTTCTATCCTTGATTGGAGTCCTATTCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-'42-43,'42-42,43-43=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(17.5=46.2)
A:
PF077289=AAA_5=FE(35.8=100)
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGATGATGACTCTGGGGC
R:
GTGGCAGGAGAAGCATTGTCA
Band lengths:
253-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)