GgaEX6020583 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78554888-78557644:+
Coord C1 exon
chr2:78554888-78555041
Coord A exon
chr2:78555611-78555757
Coord C2 exon
chr2:78557403-78557644
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGGTGATCTGCCTGCCTAGATT
3' ss Score
6.02
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTGGAGAATGCTGGACTTGTTTGTCATCCTCCTTGGAAACTGAAAGTTATCCAACTTTTTGAAACTCAAAGAGTAAGACATGGATTGATGACTTTAGGGCCCAGTGGTTCAGGAAAAACTGCTTGTATCCACACTTTGATGAAAGCCATGACAG
Seq A exon
ATTGTGGACAGCCGCATCGTGAAATGAGAATGAATCCTAAAGCTATAACAGCACCGCAGATGTTTGGTCGTCTTGATGTGGCAACAAATGATTGGACAGATGGAATATTTTCCAGTCTCTGGAGAAAAACTTTAAGAGCCAAGAAAG
Seq C2 exon
GTGACCATGTCTGGATAGTTCTTGATGGTCCAGTTGATGCTATTTGGATTGAGAACCTTAATTCTGTCCTGGATGACAACAGAACTCTAACACTTGCAAATGGAGATCGTATACCTATGGCACCAAATTGTAAAATAGTCTTTGAACCTCACAATATTGATAATGCTTCTCCAGCAACAGTCTCAAGGAATGGGATGGTATTCATGAGCTCATCAGTTCTCAACTGGAGCCCTATCCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'46-50,'46-49,47-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.220 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(17.5=46.2)
A:
PF077289=AAA_5=FE(35.8=100)
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGTGGTTCAGGAAAAA
R:
TCCTTGAGACTGTTGCTGGAGA
Band lengths:
246-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]