BtaEX6076045 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59350538-59357374:+
Coord C1 exon
chr20:59350538-59350739
Coord A exon
chr20:59351834-59352069
Coord C2 exon
chr20:59357156-59357374
Length
236 bp
Sequences
Splice sites
3' ss Seq
TGGACATTTGGGTTTTACAGCTG
3' ss Score
6.54
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GAAGTTATTACATCCATGGAGTGCTTCAAACGCTATGATCACATTTGGCAAAAGGAGAAAGAAGAAACTATTATGACGTTTATTATAAAAAACCCCTCACTTTCTGAATTTGAATCCCAGATTCTCTACTTCCAAAAACTAGAGCAAGAAATTAATGCTGAGCCTGAGTATATCTGTGTGGGTGCCATTGCCCTGTATACAG
Seq A exon
CTGATCTGAAGTTCACCTTGACTGCTGAGACGAAGGCCTGGATGGTTGTCATCGGCCGTCACTGTAACCAAAAATACAGAAGTGAAATGGAAAACATTTTTACACTTGTTGAAGAATTCAATAAGAAACTGAATCGCCCCATTAAAGACTTAGATGATATTCGAATTGCCATGGCAGCACTGAAGGAAATTAGGGAGCAGCAAATCGCCATTGACTTTCAAGTGGGACCCGTCGAG
Seq C2 exon
GAATCCTATACTCTGCTTAACAAATATGGGCTTCTGATAGCAAAGGAAGAGATGGACAAAGTGGATGCCCTGCGTTACTCTTGGGAGAAGCTTCTGGCACGTGCCAGTGAAGTTCAGAATGAACTAGTCTCACTACAACCCGGTTTCAGGAAAGAGCTTATTGGTACCGTGGAGGTTTTCCTCCAAGACTGTCACCAGTTCTATCAGGACTATGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGGAGTGCTTCAAACGC
R:
TCTGAACTTCACTGGCACGTG
Band lengths:
308-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]