GgaEX1020201 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78534708-78537683:+
Coord C1 exon
chr2:78534708-78534909
Coord A exon
chr2:78536404-78536639
Coord C2 exon
chr2:78537465-78537683
Length
236 bp
Sequences
Splice sites
3' ss Seq
TAAACGTTCACTGTTTTCAGCTG
3' ss Score
6.88
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
Exon sequences
Seq C1 exon
GAGGTTCTTACAGCTTTGGAGAGTTTTGGTTGTTACCACCATATATGGCAGAAGGATAAGGAGGAAACCATTGAAAAATTCATGATGGGAAACCCATTACTCTCTGAAGTGGAATCTCAAATTCTACTTGTCAAAGACTTGGAGATGAAAGTCAGTTCTGAGCCTGAATACATCTGTGTGGGAGCTATTGCACTGTACACTG
Seq A exon
CTGATCTGAAGCTAGCACTGAGAGCAGAAATCAAAGACTGGATGAGTGTCTTGGGTTATCATTGTAATAAGAAGTACAGAACAGAGATGGAAACGATTTTCACTTTTATAGAGGAAACTGACAGGAAGTTAAATCGTCGCATTGAGGATCTGGATGACATAAGAACAGCCATGTCTGCATTAAAAGACATTAGAGAACTACAGATTTCCATAGACTCTCAAGTTGGGCCCGTTGAG
Seq C2 exon
GAATCCTATGCTATATTAAACAAGTATGATCTCCTTGTGACCAAGGAAGAGTCAGAGAAGGTGGATACTTTGCACTACACTTGGGAAAAGCTGCTGTTCCGAGCAAATGAAGTGCAGAATGAGCTCATTGCTTTGCAGCCAAAGTTCAGAAGAGAGCTAATAAGCTCTCTGAAGACTTTTACTGAAGATTGTGCACAGTTCTGTTCAGATTATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'28-32,'28-31,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAAGGATAAGGAGGAAACC
R:
TTTGGCTGCAAAGCAATGAGC
Band lengths:
299-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]