HsaEX6097366 @ hg19
Exon Skipping
Gene
ENSG00000039139 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:2950]
Coordinates
chr5:13867883-13871874:-
Coord C1 exon
chr5:13871673-13871874
Coord A exon
chr5:13870876-13871111
Coord C2 exon
chr5:13867883-13868101
Length
236 bp
Sequences
Splice sites
3' ss Seq
AGACATTTGGGTTTTTACAGCTG
3' ss Score
6
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GAAGTTATTACATCCATGGATTGCTTCAAACGCTACAATCACATTTGGCAAAAGGGAAAAGAAGAAGCCATTAAGACATTTATTACACAGAGCCCCTTGCTTTCTGAATTTGAGTCCCAGATTCTCTATTTCCAAAACCTAGAGCAGGAAATTAATGCTGAGCCTGAATATGTCTGTGTGGGTTCCATTGCTCTGTACACAG
Seq A exon
CTGACTTGAAGTTCGCCCTGACTGCTGAGACAAAGGCCTGGATGGTTGTCATTGGACGCCACTGTAACAAAAAATACCGGAGTGAGATGGAAAACATTTTTATGCTTATTGAAGAATTCAATAAGAAACTAAATCGTCCAATTAAGGACCTAGATGATATTCGGATTGCAATGGCAGCGCTGAAAGAAATAAGGGAGGAGCAAATCTCCATTGACTTTCAAGTAGGACCTATTGAG
Seq C2 exon
GAATCTTATGCCCTGCTTAACAGATATGGACTTCTGATAGCAAGGGAAGAGATAGACAAAGTTGATACACTGCACTATGCTTGGGAGAAGCTGCTGGCACGTGCTGGCGAAGTCCAGAATAAATTAGTCTCACTGCAGCCCAGTTTCAAGAAAGAGCTTATTAGTGCTGTGGAGGTATTCCTCCAAGATTGTCACCAGTTTTATCTGGACTATGATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-'24-25,'24-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAAAGGGAAAAGAAGAAGCC
R:
TTGAAACTGGGCTGCAGTGAG
Band lengths:
305-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)