BtaEX6076074 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017222 | CTNND2
Description
catenin (cadherin-associated protein), delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
Coordinates
chr20:62004028-62174060:+
Coord C1 exon
chr20:62004028-62004289
Coord A exon
chr20:62134655-62134787
Coord C2 exon
chr20:62173847-62174060
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTCCTTTTGTTCAGAGA
3' ss Score
8.89
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CCCTAGCCCCGTCCTCCCCCGGTGTCGACTCCGTCCCCTTGCAGCGCACAGGCAGCCAGCACGGCCCGCAGAGCGCCGCCGCAGCCACCTTCCAGAGGGCCAGCTATGCCGCCGGCCCTGCCTCCAGCTACGCGGACCCCTACCGACAGCTGCAGTACTGTCCTTCCGTTGAGTCTCCGTACAGCAAATCCGGCCCTGCCCTTCCCCCTGAAGGCACCTTGGCCAGGTCCCCATCCATCGACAGCATTCAGAAAGATCCCAG
Seq A exon
AGAGTTTGGATGGAGAGACCCGGAGCTACCTGAAGTGATACAGATGTTACAACATCAGTTTCCTTCCGTCCAGTCTAATGCTGCAGCCTATTTACAGCACCTCTGTTTTGGAGACAACAAAATTAAAGCCGAG
Seq C2 exon
ATAAGGAGACAAGGGGGCATCCAGCTCCTGGTGGACTTGCTGGACCATCGGATGACTGAAGTCCACCGTAGCGCCTGTGGCGCCTTGAGAAACTTGGTGTACGGGAAGGCCAATGATGACAACAAAATCGCCCTGAAGAACTGTGGCGGGATCCCAGCCCTGGTGCGGCTGCTCCGCAAGACCACTGACTTGGAGATCCGGGAGCTGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017222-'6-13,'6-11,7-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=PU(7.5=3.4)
A:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
C2:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCGTACAGCAAATCCGG
R:
GATCCCGCCACAGTTCTTCAG
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]