MmuEX6053108 @ mm10
Exon Skipping
Gene
ENSMUSG00000022240 | Ctnnd2
Description
catenin (cadherin associated protein), delta 2 [Source:MGI Symbol;Acc:MGI:1195966]
Coordinates
chr15:30683215-30806899:+
Coord C1 exon
chr15:30683215-30683470
Coord A exon
chr15:30775099-30775231
Coord C2 exon
chr15:30806686-30806899
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTTCCTTTTATCCAGGGA
3' ss Score
8.17
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCCCGTCCTCCCCTGGTGTCGACTCCGTCCCCTTGCAGCGCACAGGCAGCCAACACGGGCCACAGAATGCCGCCGCAGCCACCTTCCAGAGGGCCAGCTATGCTGCCGGCCCAGCCTCCAACTACGCAGACCCCTACCGACAGCTGCAGTATTGTGCCTCCGTTGACTCTCCGTACAGCAAATCTGGCCCTGCCCTCCCACCCGAAGGCACCTTGGCCAGATCCCCATCCATCGACAGCATTCAGAAAGACCCCAG
Seq A exon
GGAGTTTGGATGGAGAGACCCGGAGCTGCCTGAAGTGATACAGATGTTACAGCACCAGTTCCCTTCAGTCCAGTCCAATGCTGCAGCTTACCTGCAACACCTCTGTTTTGGAGACAATAAAATTAAGGCAGAG
Seq C2 exon
ATAAGGAGACAAGGAGGGATACAGCTCCTGGTGGACCTGCTGGATCACCGAATGACAGAAGTCCACCGTAGTGCCTGTGGGGCTCTGAGGAACCTGGTGTATGGGAAGGCCAATGATGATAACAAAATCGCCCTGAAAAACTGTGGTGGTATCCCAGCGCTGGTGAGACTCCTTCGCAAGACCACAGACCTGGAGATCCGGGAGCTGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022240-'29-37,'29-33,33-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=PU(7.5=3.5)
A:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
C2:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
Main Skipping Isoform:
ENSMUST00000081728fB8351
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAACTACGCAGACCCCTA
R:
TACACCAGGTTCCTCAGAGCC
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types