GgaEX1002867 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:77805697-77895610:+
Coord C1 exon
chr2:77805697-77805949
Coord A exon
chr2:77872756-77872888
Coord C2 exon
chr2:77895397-77895610
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCTTACTTGTTTTCCCACAGAGA
3' ss Score
11.28
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
CCCCATCTTCCCCTGGTGTCGACTCCGTACCCTTACAGCGCACAGGCAGTCAACACGGCACACAGAACGCAACCGCGACCTTCCAGAGGGCCAGCTATGCTGCAGGCCCAGCCTCCAATTACGCAGACCCCTACCGACAGCTGCAGTATTGTCCTTCTGTTGAATCACCATACAGCAAATCTGGGCCAGCCATCCCACCTGAGGGGACCTTGGCTAGGTCACCTTCCATTGATAGCATTCAGAAAGATCCCAG
Seq A exon
AGAGTTTGGATGGCGAGATCCAGAGCTTCCAGAAGTTATACAGATGTTACAGCATCAATTTCCGTCAGTACAGTCCAATGCTGCAGCCTACTTACAGCACCTCTGTTTTGGAGACAATAAAATAAAAGCAGAG
Seq C2 exon
ATAAGAAGACAAGGCGGGATACAATTACTGGTGGACCTATTGGACCATCGGATGACAGAAGTCCACCGTAGTGCCTGTGGAGCTTTGAGAAATTTGGTGTATGGGAAGGCAAATGATGACAACAAAATAGCTCTGAAAAACTGTGGTGGTATTCCAGCATTAGTACGGTTACTCCGCAAGACTACAGATTTGGAAATCAGAGAACTGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001-'2-17,'2-11,9-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=0.178 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=PU(7.5=3.5)
A:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
C2:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
Main Skipping Isoform:
ENSGALT00000037100fB4170
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAACACGGCACACAGAA
R:
TGGTCCAATAGGTCCACCAGT
Band lengths:
254-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]