BtaEX6076668 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016158 | ACAN
Description
aggrecan [Source:HGNC Symbol;Acc:HGNC:319]
Coordinates
chr21:20834629-20836998:+
Coord C1 exon
chr21:20834629-20834756
Coord A exon
chr21:20835037-20835330
Coord C2 exon
chr21:20836594-20836998
Length
294 bp
Sequences
Splice sites
3' ss Seq
CCTGGCTGTGTCTTTTGCAGGCG
3' ss Score
12.11
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTATCCCATCCACACGCCGAGGGAAGGTTGCTATGGAGACAAGGACGAGTTTCCCGGCGTGAGAACCTACGGCATCCGGGACACCAACGAAACCTATGACGTGTACTGCTTCGCGGAGGAGATGGAGG
Seq A exon
GCGAGGTCTTCTATGCAACATCCCCGGAGAAGTTCACCTTCCAAGAGGCAGCCAACGAGTGCCGGCGGCTGGGCGCCCGGCTGGCCACCACGGGCCAACTCTACCTGGCCTGGCAGGGTGGCATGGACATGTGCAGCGCCGGCTGGCTGGCTGACCGCAGCGTGCGATACCCCATCTCCAAGGCCCGGCCTAACTGCGGGGGCAACCTCCTGGGAGTGAGGACCGTCTACCTGCACGCCAACCAGACGGGCTACCCTGACCCTTCATCCCGCTATGACGCCATCTGCTACACAG
Seq C2 exon
GTGAAGACTTTGTGGACATCCCAGAAAGCTTTTTCGGGGTGGGCGGTGAGGAGGACATCACCATCCAGACGGTGACCTGGCCTGACGTGGAGCTGCCCCTGCCCCGAAATATCACTGAGGGTGAAGCCCGAGGCAGCGTGATCCTCACGGCAAAGCCCGACTTTGAAGTCTCCCCCACCGCCCCGGAACCCGAGGAGCCTTTCACGTTTGTCCCTGAAGTAAGGGCCACTGCATTCCCCGAAGTAGAGAACAGGACTGAAGAGGCCACCCGGCCCTGGGCCTTTCCCAGAGAGTCCACCCCCGGCCTGGGAGCCCCCACGGCCTTCACCAGCGAGGACCTCGTCGTGCAGGTGACCTTAGCCCCAGGTGCGGCTGAGGTCCCTGGGCAGCCACGACTGCCAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016158-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.574
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACGTGTACTGCTTCGCG
R:
TGGCCTCTTCAGTCCTGTTCT
Band lengths:
301-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]