DreEX6102145 @ danRer10
Exon Skipping
Gene
ENSDARG00000045799 | acanb
Description
aggrecan b [Source:ZFIN;Acc:ZDB-GENE-100422-16]
Coordinates
chr25:19120251-19121330:-
Coord C1 exon
chr25:19121203-19121330
Coord A exon
chr25:19120821-19121114
Coord C2 exon
chr25:19120251-19120547
Length
294 bp
Sequences
Splice sites
3' ss Seq
GGACTCTCCTCATCACCTAGGCA
3' ss Score
5.96
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATATCCTATCCATGAACCAAGGGAGCCTTGTTATGGAGACAAAGATAATTTCCCAGGTGTTCGAACATATGGAGTCCGAGACGTCAATGAAACCTATGATGTGTACTGTTTTGCAGAGAAAATGTCAG
Seq A exon
GCAGAGTGTTCTACTCTATGTCTGTGGAAAAGTTCACCTTTGCAGATGCTGAAGACCAATGTGCAAAGTTAGGAGCCCAATTAGCTACCACAGGACAGCTGTACCTAGCATGGAAGACTGGCATGGATGTGTGCAACGCTGGCTGGCTTGCAGACAGGAGTGTGCGGTACCCTATAAATATAGCTAGACCCCAATGTGGTGGGGGGCTTTTGGGAGTGCGAACAGTTTACCTGTTTCCAAATCAGACTGGTTATCCATACCCAGACTCCCGCTATGATGCAATCTGTTATGAAG
Seq C2 exon
ATAAAGAAGATAAGGTCTTAATAAAGACCACGCCATTTCCAGAAATATACACTACCACCGAGTCAGTGTTAACAGTGGCTACAGTTACATCAAGCTCTTCAGATTATACAGAACAAGTGACCACTGAAGGAGAGGTTCGTGGCCAAATATTGACAGATGAGCCTTTTAACACAACAAGCACAGAAAGTCCCCTATCTCCACCTCTCAACATAACTGATGTTGAGGAAGACATCATCAATGTGGCCACAGCTCCACCTTCCCTGGAACATGCAATTCCCAGTATCAATGTCACTGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045799-'4-7,'4-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.370
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGAGACGTCAATGAAACCT
R:
GAGCTGTGGCCACATTGATGA
Band lengths:
307-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]