MmuEX0003394 @ mm10
Exon Skipping
Gene
ENSMUSG00000030607 | Acan
Description
aggrecan [Source:MGI Symbol;Acc:MGI:99602]
Coordinates
chr7:79088178-79091343:+
Coord C1 exon
chr7:79088178-79088305
Coord A exon
chr7:79089603-79089896
Coord C2 exon
chr7:79090939-79091343
Length
294 bp
Sequences
Splice sites
3' ss Seq
GATGCGTCTGTCCTTCACAGGTG
3' ss Score
10.71
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
ATACCCCATCCACACGCCCCGGGAAGGTTGCTATGGTGACAAGGACGAGTTCCCTGGAGTGAGAACCTACGGAATCCGGGACACCAATGAGACCTATGATGTGTACTGCTTCGCTGAGGAGATGGAGG
Seq A exon
GTGAGGTCTTTTATGCGACATCCCCAGAGAAATTCACCTTCCAGGAGGCAGCCAACGAGTGCCGGAGGCTGGGGGCACGCTTGGCCACCACAGGCCAGCTCTACCTGGCCTGGCAGGGCGGTATGGACATGTGCAGCGCTGGCTGGCTGGCGGACCGCAGCGTGCGCTACCCCATCTCCAAGGCTCGGCCCAACTGCGGGGGCAACCTCCTGGGTGTAAGGACTGTCTATCTACACGCCAACCAGACAGGCTATCCTGATCCCTCATCCCGATATGACGCCATCTGTTACACAG
Seq C2 exon
GTGAAGATTTTGTAGACATCCCAGAAAACTTCTTCGGGGTGGGTGGTGAAGACGACATCACCATCCAGACGGTGACCTGGCCAGACCTGGAGCTGCCCCTGCCCCGTAATGTCACAGAGGGAGAGGCCCTGGGCAGCGTGATCCTTACAGCAAAGCCCATCTTTGACCTGTCCCCCACTATCTCAGAGCCGGGGGAGGCCCTCACACTTGCCCCTGAAGTGGGGAGCACAGCCTTCCCAGAGGCTGAGGAGAGAACTGGAGAAGCCACCAGACCCTGGGGCTTTCCTGCAGAAGTCACACGTGGGCCGGACTCTGCCACTGCCTTCGCCAGTGAGGACCTGGTAGTGCGAGTGACCATCTCTCCAGGTGCAGCTGAAGTCCCTGGTCAGCCCCGCTTGCCAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030607-'6-5,'6-4,8-5
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.360
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGTTCCCTGGAGTGAGA
R:
CACTTCAGGGGCAAGTGTGAG
Band lengths:
306-600
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types