BtaEX6077442 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004024 | UBE2Q2
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075530]
Coordinates
chr21:31704144-31708698:+
Coord C1 exon
chr21:31704144-31704192
Coord A exon
chr21:31704625-31704720
Coord C2 exon
chr21:31708632-31708698
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTTCTTTCTATAGGGC
3' ss Score
11.92
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTACGTGTTGGGTGGTGGAGCACTGTGCATGGAACTACTCACAAAACAG
Seq A exon
GGCTGGAGCAGTGCCTATTCAATAGAATCGGTCATCATGCAGATCAATGCCACCTTAGTTAAAGGCAAAGCCAGAGTGCAGTTTGGAGCAAATAAG
Seq C2 exon
AATCAATATAATCTAGCAAGAGCCCAGCAATCTTATAATTCCATTGTACAGATACATGAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004024-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(10.3=100)
A:
PF0017921=UQ_con=FE(19.9=100)
C2:
PF0017921=UQ_con=PD(12.2=82.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGTGTTGGGTGGTGGAG
R:
ACAATGGAATTATAAGATTGCTGGGC
Band lengths:
96-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]