GgaEX6007411 @ galGal4
Exon Skipping
Gene
ENSGALG00000002989 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr10:3001417-3002457:-
Coord C1 exon
chr10:3002409-3002457
Coord A exon
chr10:3002112-3002207
Coord C2 exon
chr10:3001417-3001483
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCTTCCTCCTGCAGGGC
3' ss Score
12.05
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATATGTCCTAGGTGGAGGTGCATTATGCATGGAACTTCTTACCAAACAG
Seq A exon
GGCTGGAGCAGTGCCTATTCAATAGAATCAGTCATCATGCAGATCAATGCCACTTTAGTCAAAGGAAAAGCCAGAGTTCAGTTTGGAGCCAATAAG
Seq C2 exon
AATCAATATAACCTAGCAAGAGCACAGCAGTCCTATAAGTCACTAGTACAAATACATGAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989-'14-19,'14-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(10.3=100)
A:
PF0017921=UQ_con=FE(19.9=100)
C2:
PF0017921=UQ_con=PD(12.2=82.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGTGGAGGTGCATTATGC
R:
TTTGTACTAGTGACTTATAGGACTGC
Band lengths:
95-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]