GgaEX6007411 @ galGal3
Exon Skipping
Gene
ENSGALG00000002989 | UBE2Q2
Description
NA
Coordinates
chr10:4443286-4444326:-
Coord C1 exon
chr10:4444278-4444326
Coord A exon
chr10:4443981-4444076
Coord C2 exon
chr10:4443286-4443352
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCTTCCTCCTGCAGGGC
3' ss Score
12.05
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATATGTCCTAGGTGGAGGTGCATTATGCATGGAACTTCTTACCAAACAG
Seq A exon
GGCTGGAGCAGTGCCTATTCAATAGAATCAGTCATCATGCAGATCAATGCCACTTTAGTCAAAGGAAAAGCCAGAGTTCAGTTTGGAGCCAATAAG
Seq C2 exon
AATCAATATAACCTAGCAAGAGCACAGCAGTCCTATAAGTCACTAGTACAAATACATGAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(10.3=100)
A:
PF0017921=UQ_con=FE(19.9=100)
C2:
PF0017921=UQ_con=PD(12.2=82.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGTGGAGGTGCATTATGC
R:
TTTGTACTAGTGACTTATAGGACTGC
Band lengths:
95-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]