BtaEX6077446 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004024 | UBE2Q2
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075530]
Coordinates
chr21:31671272-31677965:+
Coord C1 exon
chr21:31671272-31671328
Coord A exon
chr21:31674616-31674756
Coord C2 exon
chr21:31677881-31677965
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATTTTTAATTTTTTTGTAGGAT
3' ss Score
8.36
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
AATGGGACAACAGAAGAGGTGACTTCAGAAGAGGAGGAAGAGGAAGAGATGGCTGAA
Seq A exon
GATATAGAAGACTTGGATCATTATGAGATGAAGGAAGAAGAGCCCATTAGTGGGAAAAAGTCAGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAAAGGCAAGACCATCTAAAT
Seq C2 exon
GGTGCAGTGTCTGGGTCTGTACAAGCTTCAGATAGACTTATGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004024-'14-13,'14-11,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.660 C2=0.138
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(13.8=100)
A:
PF0577317=RWD=PD(10.0=27.7)
C2:
PF0017921=UQ_con=PU(10.9=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAACAGAAGAGGTGACT
R:
ACTCTGTGATCTGTATATGTCCCTGA
Band lengths:
130-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]