GgaEX7007352 @ galGal4
Exon Skipping
Gene
ENSGALG00000002989 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr10:3012500-3020245:-
Coord C1 exon
chr10:3020189-3020245
Coord A exon
chr10:3019508-3019648
Coord C2 exon
chr10:3012500-3012584
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATCTTTCTTTGTCCTGTAGGAC
3' ss Score
10.16
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AATGGAACAACGGAAGAAGTTACATCGGAGGAGGAGGAGGAGGAAGATATGGGTGAA
Seq A exon
GACATTGAAGATCTGGATCACTATGATATGAAGGAGGAGGAACCAGTTGACGGGAAGAAATCCGAGGATGAAGGCATTGAAAAAGAGAACCTTGCAATCTTAGAAAAAATCAGAAAAAATCAAAGGCAAGATCACTTAAAT
Seq C2 exon
GGTGCAGTCTCTGGGTCAGTTCAGGCTTCAGATCGACTTATGAAGGAACTCAGGGATATATATAGATCACAGAGCTATAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989-'4-8,'4-5,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.574 C2=0.172
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0017921=UQ_con=PU(10.9=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAACGGAAGAAGTTACATCG
R:
AGCTCTGTGATCTATATATATCCCTG
Band lengths:
130-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]