DreEX6102965 @ danRer10
Exon Skipping
Gene
ENSDARG00000013990 | ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1919]
Coordinates
chr25:29001711-29007369:-
Coord C1 exon
chr25:29007313-29007369
Coord A exon
chr25:29007073-29007225
Coord C2 exon
chr25:29001711-29001795
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTGCTGTGGCAGCAGGAT
3' ss Score
1.7
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
CATGGAACAACAGACGAAGTGACATCAGAAGAAGAGGAGGAAGAGGAAATGGCAGAG
Seq A exon
GATATTGAAGATCTAGACCACTATGAGATGAAAGAGGAACCAGTGGATGGGAAAAAGTCGGAGGACGATGGCATAGAGAAGGAGAACCTGGCCATTCTGGAGAAAATCCGCAAGAACCAGAGGCAGGACCACTTGAACGTAAGTGTCCATTCG
Seq C2 exon
GGTGCGGTGTCCGGTTCAGTTCAGGCCTCCGACCGCCTCATGAAGGAACTCAGGGAGATCTATAGATCACAGAGTTATAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013990-'5-6,'5-4,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.540 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0017921=UQ_con=PU(10.9=58.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAACAGACGAAGTGACA
R:
GATCTATAGATCTCCCTGAGTTCCT
Band lengths:
123-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]