BtaEX6080871 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34982988-34983607:-
Coord C1 exon
chr18:34983513-34983607
Coord A exon
chr18:34983260-34983403
Coord C2 exon
chr18:34982988-34983121
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCCTATCCCCACCCTCCAGACT
3' ss Score
6.95
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTGCTCCTCCGTGGGCCAATTTGGTGTCCATCCTGGAGGAGAAGAACGGCACTGACCCCGAGCTGCTGGTGTACACTGTAACCCTCATCAACAAG
Seq A exon
ACTCTGGCAGCCCTCCCGGACCAGGACTCCTTCTACGACGTGACGGATGCACTGGAGCAGCAGGGCATGGAAGCACTGGTCCAGCACCACTTGGGCAAGGCGGGCACTGACGTCGACCTGCGAGCCCAACTTGTACTCTATGAG
Seq C2 exon
AACGCCCTGCGGTTGGAGGATGGAGACCTCGAAGAAGCCGTCACAGGTGGGCGGCGCACCACCCGCCGAAAACCTTCCTCAGAGGAGGGCAAGAGGAGCCGCCGATCTCTAGAAGTGCGCTCCCCAGAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427-'9-15,'9-14,10-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.104 C2=0.844
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCGTGGGCCAATTTG
R:
CTGGGGAGCGCACTTCTAGAG
Band lengths:
219-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]