DreEX0032776 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34313012-34314708:+
Coord C1 exon
chr7:34313012-34313106
Coord A exon
chr7:34313192-34313335
Coord C2 exon
chr7:34314516-34314708
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTCTGTCCTCTCAGACT
3' ss Score
10.71
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GTGTGAAGCCTTGGACGATCCTTATAGACATTCTGTCTGCAAAGAATGGATCAGACACAGAGCTGCTCATCTACACCATGACCCTCATTAACAAG
Seq A exon
ACTCTGGCAGCACTTCCTGATCAGGACTCATTTTATGATGTGACAGACTGTTTGGAGCAGCTAGAAATGGAAAGCATCATCCAGAAACACATGACTAGCAGCGGCACTGAGGGTGACCTTAAACAGCAGTTCACTATTTATGAG
Seq C2 exon
AAAGCCCTAAAGTGTGAAGATGGAGAGATGGATGAAACGGCACCAAATGTGCGTAAAGACAGAAGGAAACTGACACCCAGTGAGCAGGAGGGCAGGAAGAGCCGGCGATCGTCTTCTCACAATCTTACAGATAGCTCCTTTCGACCAGCCTCCCCGACTGTTTCAGTCTCTTCTAACAGTCCAACCCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.229 C2=0.954
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAAGCCTTGGACGATCC
R:
AGGCTGGTCGAAAGGAGCTAT
Band lengths:
246-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]