HsaEX6044342 @ hg19
Exon Skipping
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:17905]
Coordinates
chr16:67270869-67271472:-
Coord C1 exon
chr16:67271378-67271472
Coord A exon
chr16:67271142-67271285
Coord C2 exon
chr16:67270869-67271017
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTCTTATCCCCGCCCTCCAGACG
3' ss Score
7.98
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTGCTCCTCCCTGGGCCAATCTGGTGTCCATCCTGGAGGAGAAGAATGGCGCTGACCCTGAGTTGTTGGTGTACACGGTCACCCTCATCAACAAG
Seq A exon
ACGCTGGCGGCGCTCCCGGACCAGGACTCCTTCTACGATGTGACGGATGCACTGGAGCAGCAGGGCATGGAAGCGCTGGTCCAGCGCCACCTGGGCACTGCGGGCACTGACGTCGACCTGCGCACGCAGCTTGTGCTCTACGAG
Seq C2 exon
AACGCCCTGAAATTGGAGGATGGAGACATCGAAGAAGCCCCAGGCGCTGGTGGGCGGCGGGAACGACGAAAGCCTTCTTCTGAGGAGGGCAAGAGGAGCCGCCGTTCTCTGGAAGGCGGGGGCTGCCCCGCGCGTGCCCCGGAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.196 C2=0.876
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCCTGGGCCAATCTG
R:
CCCCCGCCTTCCAGAGAA
Band lengths:
214-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)