BtaEX6080877 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34978145-34979444:-
Coord C1 exon
chr18:34979283-34979444
Coord A exon
chr18:34978429-34978619
Coord C2 exon
chr18:34978145-34978337
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTTACCCCTTGCTTTTCCAGGTG
3' ss Score
13.39
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
AGCAGCGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAAGTGAAGGACACGGTGCGCCGCCAGCCCCTGCTGCACCACCTGTGCGCCCTGGTGCTGCAGGCCCGGCCTGACTCCTCCGACCTGTACTCGGAGATCCCCGCCCTGGCCCGCTGCGCCAAG
Seq A exon
GTGGACTTTGAGCAGCTGACTGAGAACCTGGGGCAGCTGGAGCGCCGGAGCCGGGCAGCTGAAGACAGCCTGCGGAGCCTGACCAAGCATGATCTGGCTCCAGCCCTGCGTGCCCGCCTCACCCACTTCCTGGTGCACTGTACCCGCCGTGTTGCCATGCTGAGGGTCGTACACCGCCGTGTCTGCAACAG
Seq C2 exon
GTTCCATGCCTTCCTGCTGTACCTGGGGTACACGGCAGAGGCAGCCCGTGAGGTCCGCATCATGCAGTTTTGCCACACGCTGCGGGAGTTCGCACTGGAGTATCGGACCTGCCGGGACCGGGTGCTGCAGCAGCAACAGAAGCGGGCCACATACCGTGAGCGCAACAAGACTCGGGGACGTATGATCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427-'28-39,'28-38,30-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.331
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.2=100)
A:
PF0218118=FH2=FE(16.9=100)
C2:
PF0218118=FH2=PD(9.4=53.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGAGCTACCTGGAGAA
R:
TCCGATACTCCAGTGCGAACT
Band lengths:
258-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]