DreEX0032773 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34338068-34339037:+
Coord C1 exon
chr7:34338068-34338229
Coord A exon
chr7:34338522-34338712
Coord C2 exon
chr7:34338845-34339037
Length
191 bp
Sequences
Splice sites
3' ss Seq
TGCCTTGCCTTTTATCATAGGTG
3' ss Score
8.78
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCGAAGGGCTTTGAGCTCGGTTATCTGGAGAAGGTGACCGAGGTGAAGGACACTGTGCACAGACAGTCTCTGCTTCATCATACCTGCAATTTTGTGGTGGAAAATTACCCAGACACGACTGACCTTTACTCTGAGATCCCTGCTATCACACGCTCTGCTAAA
Seq A exon
GTGGAGTTTGAGCAATTATCTGAAAACCTGATTCAGTTGGAAAGAAAATGCAAAACGTCCTGGGACAACCTTAAAGTTGTGGCCAAGCATGAAACTAAACCCAACTTAAAAAACAAAATGACTGAATTCCTGAAAGACTGTACTGAAAGAATCATCATCCTGAAAGTAGTGCACAGACGCATTATTAACAG
Seq C2 exon
GTTTCATTCTTTCCTGTTGTACTTGGGTCATCCTTCATACTCGGTGCGGGACACTAAAGTGACTCATTTCTGTAAGATCATCAGTGAGTTTGCCCTGGAGTATCGCACCACTCGTGAGAGAGTCCTCACTCAGAAACGCAAGCGTGCCGTCCACCGAGAGCGCACCAAAACCCGGGGCAAGCTAATCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'23-26,'23-25,24-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.329
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.4=100)
A:
PF0218118=FH2=FE(17.1=100)
C2:
PF0218118=FH2=PD(9.5=53.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGAGAAGGTGACCGAGG
R:
GCGATACTCCAGGGCAAACTC
Band lengths:
246-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]