MmuEX6037927 @ mm10
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:105330095-105331290:-
Coord C1 exon
chr8:105331129-105331290
Coord A exon
chr8:105330387-105330577
Coord C2 exon
chr8:105330095-105330287
Length
191 bp
Sequences
Splice sites
3' ss Seq
TGTACCCTCTTGCTTTTCAGGTG
3' ss Score
12.6
5' ss Seq
TAGGTGGGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
AGCAGTGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAAGTGAAGGACACAGTGCGACGGCAGTCATTGCTCTATCATCTCTGCTCCCTGGTGCTCCAGACCCGACCTGATTCCTCTGACCTCTACTCAGAAATTCCTGCCCTCACCCGCTGTGCCAAG
Seq A exon
GTGGACTTTGAACAGCTGACTGAGAACCTAGGGCAGCTGGAGTGCCGGAGCCAGGCTGCCGAGGACAGCCTCCGGAGCTTGGCTAAGCACGAGCTCTCCCCAGCTCTGCGTGCTCGCCTCACCCACTTCTTGGCCCAGTGTACCCGCCGGGTAGCCATGTTAAGAGTAGTGCATCGCCGAGTCTGCAATAG
Seq C2 exon
GTTCCATGCCTTCCTGCTCTACCTGGGCTACACCCCACAGGCAGCAAGGGATGTACGCATCATGCAGTTCTGCCACACACTGAGAGAGTTTGCCCTTGAGTATCGGACTTGTCGGGAACGGGTACTGCAGCAGCAGCAGAAGCGGGCTACATACCGTGAGCGCAACAAGACCCGTGGTCGCATGATTACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'27-40,'27-39,29-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.2=100)
A:
PF0218118=FH2=FE(16.9=100)
C2:
PF0218118=FH2=PD(9.4=53.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGAGCTGAGCTACCTGG
R:
ACTCTCTCAGTGTGTGGCAGA
Band lengths:
244-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types