BtaEX6081127 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033248 | CDH3
Description
Bos taurus cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001244605]
Coordinates
chr18:36126003-36129071:+
Coord C1 exon
chr18:36126003-36126131
Coord A exon
chr18:36127024-36127209
Coord C2 exon
chr18:36128830-36129071
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTCCATGTTGACAGTAT
3' ss Score
6.14
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
AGAGTCCCCGAGTACACACTGACCATCCATGCCACAGACATGGATGGGGACGGCTCCAGCACCACGGCTATGGCCATAGTGGAAATCCTCGATGCCAACGACAATGCTCCCGTGTTTGATCCCCAGAAG
Seq A exon
TATGAGGCCCGTGTGCCTGAGAACACAGTGAGCCACGAGGTGCAGAGGCTGACAGTGACTGATCTGGACGCCCCTAACTCACCAGCATGGCGTGCCACCTACCGCATCGTGGGAGGTGACAACGGGGACCATTTTACCATCACTACTGACCCCGAGAGCAACCAGGGTATCCTGACCACCCAGAAG
Seq C2 exon
GGCTTGGATTTTGAGGCCAAAACCCAGCACACCCTGTACGTCGAAGTGATCAACGAGGTTCCCTTTGTGGTGAAACTCCCGACCTCCACAGCCACCGTAGTGGTCCTCGTGGAGGATGTGAATGAGCCACCCGTGTTTGTCCCCCCGTCCAAAGTCATCGAAATCCAGGAGGGCATCTCCACTGGGGAGCCTATTTGTGCCTACACTGCACGGGACCCAGACAAGGGGAGTCAGAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033248-'15-11,'15-10,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=0.726 C2=0.148
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(29.0=67.4)
A:
PF0002812=Cadherin=PU(61.0=98.4)
C2:
PF0002812=Cadherin=PD(37.0=45.7),PF0002812=Cadherin=PU(31.6=37.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGATGCCAACGACAATG
R:
TAGGCACAAATAGGCTCCCCA
Band lengths:
247-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]