RnoEX6060445 @ rn6
Exon Skipping
Gene
ENSRNOG00000020129 | Cdh3
Description
cadherin 3 [Source:RGD Symbol;Acc:621089]
Coordinates
chr19:38701165-38705584:+
Coord C1 exon
chr19:38701165-38701293
Coord A exon
chr19:38702846-38703031
Coord C2 exon
chr19:38705343-38705584
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCTCTCTTCCCAAAGTAT
3' ss Score
7.64
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AAAGTCCCTGAGTACACACTGACCATCCAGGCCACAGACATGGACGGAGACGGCTCTACCACAACAGCCGAGGCCGTAGTGCAGATCCTTGATACCAATGATAACGCTCCAGAGTTCCAGCCGCAAAAG
Seq A exon
TATGAGGCTTGGGTGCCTGAGAATGCAGTGGGCCACGAGGTACAGAGGCTGACAGTGACCGATCTGGATTCCCCCAACTCACCGGCATGGCGTGCCACCTACCACATTGTGGGAGGTGACGATGGGGATCATTTCACCGTGGCCACTCACCCAGAGACCAACCAAGGCATCCTGACAACCAAGAAG
Seq C2 exon
GGTTTGGATTTTGAGGCTCAGAACCAACACACCCTGTACATAGAAGTGACCAACGAGGCTTCCTTTGCAGTGAAGCTCCCGACTGCCACCGCCACCGTGGTGGTCCATGTGGAAGATGTCAACGAGGCCCCTGTGTTTGTTCCACCTTCCAAGGTCATTGAGGCCCAGGAAGGCATCTCTATTGGGGAACTGGTCTGTGTCTATACTGCACAGGACCCTGACAAGGAGGAACAGAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020129-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=0.677 C2=0.074
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(29.0=67.4)
A:
PF0002812=Cadherin=PU(61.0=98.4)
C2:
PF0002812=Cadherin=PD(37.0=45.7),PF0002812=Cadherin=PU(31.6=37.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACACACTGACCATCCAGGC
R:
GGCCTCGTTGACATCTTCCAC
Band lengths:
247-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]