BtaEX6081949 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021742 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr18:47388944-47403428:-
Coord C1 exon
chr18:47403370-47403428
Coord A exon
chr18:47389303-47389429
Coord C2 exon
chr18:47388944-47389039
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTCAAATTGTGTTTTAACAGGAA
3' ss Score
9.1
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTTGGCATTCTCCAGACTCTGCCCTTTTCCAGGAAGAAGAGGATATGGCCAGTTCTCTT
Seq A exon
GAAACAGTGACATTTAAGGATGTGGCTGTGGACCTCACACAGGAGGAATGGCAGCAAATGAAACCTGCTCAGAGGAACTTGTACCGTGATGTGATGCTGGAGAACTACAGCAACCTAGTCACAGTGG
Seq C2 exon
GTTGTCAAGTCACCAAACCAGATGTGATCTTCAAGTTGGAGCACGAAGAGGAGCCATGGGTGGTAGAAGAAGAAATGCTTGGGCGGCACTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021742-'5-12,'5-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCATTCTCCAGACTCTGC
R:
CTGGACAGTGCCGCCCAA
Band lengths:
154-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]