MmuEX6009692 @ mm10
Exon Skipping
Gene
ENSMUSG00000074221 | Zfp568
Description
zinc finger protein 568 [Source:MGI Symbol;Acc:MGI:2142347]
Coordinates
chr7:29989049-30013889:+
Coord C1 exon
chr7:29989049-29989107
Coord A exon
chr7:29997750-29997876
Coord C2 exon
chr7:30013840-30013889
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTATATGTATAGAAA
3' ss Score
6.2
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTTGGTGTGCCGAGGATTCTGTACCTCGCCAGGAAGAAGAAGACAGGACCAGGCCTTCA
Seq A exon
AAAACAGTGACATTCAAGGATGTGGCTGTGGACCTCACACAGGAGGAATGGCAGCAAATGAAGCCTGCTCAGAGGGCTTTGTACCGAGATGTGATGCTGGAGACCTACAGCAACCTAGTAACCGTGG
Seq C2 exon
AAGCCGCAAGAGGAAGAATGAAGAGTTTTGCCTTTAAGGACATGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074221_MULTIEX1-3/5=2-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTGCCGAGGATTCTGTA
R:
TTGGCCATGTCCTTAAAGGCA
Band lengths:
106-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types