MmuALTA0020671-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000074221 | Zfp568
Description
zinc finger protein 568 [Source:MGI Symbol;Acc:MGI:2142347]
Coordinates
chr7:29998115-30013889:+
Coord C1 exon
chr7:29998115-29998210
Coord A exon
NA
Coord C2 exon
chr7:30013843-30013889
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
CTCTTACTCTTTCCAAGAAGCCG
3' ss Score
1.76
Exon sequences
Seq C1 exon
GTTGTCAAGTCACCAAACCAGATGTGATCTTCAAGTTGGAACAAGCAGAGGAGCCATGGGTACTGGAGGAAGAGATGTTTTGGAGACGCTCTCCAG
Seq A exon
NA
Seq C2 exon
CCGCAAGAGGAAGAATGAAGAGTTTTGCCTTTAAGGACATGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074221-10-17,10-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCATGGGTACTGGAGGAA
R:
TTGGCCATGTCCTTAAAGGCA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types