MmuEX6009692 @ mm9
Exon Skipping
Gene
ENSMUSG00000074221 | Zfp568
Description
zinc finger protein 568 [Source:MGI Symbol;Acc:MGI:2142347]
Coordinates
chr7:30774068-30783229:+
Coord C1 exon
chr7:30774068-30774126
Coord A exon
chr7:30782769-30782895
Coord C2 exon
chr7:30783134-30783229
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTATATGTATAGAAA
3' ss Score
6.2
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTTGGTGTGCCGAGGATTCTGTACCTCGCCAGGAAGAAGAAGACAGGACCAGGCCTTCA
Seq A exon
AAAACAGTGACATTCAAGGATGTGGCTGTGGACCTCACACAGGAGGAATGGCAGCAAATGAAGCCTGCTCAGAGGGCTTTGTACCGAGATGTGATGCTGGAGACCTACAGCAACCTAGTAACCGTGG
Seq C2 exon
GTTGTCAAGTCACCAAACCAGATGTGATCTTCAAGTTGGAACAAGCAGAGGAGCCATGGGTACTGGAGGAAGAGATGTTTTGGAGACGCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074221-'9-7,'9-6,12-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=0.052 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTGCCGAGGATTCTGTA
R:
GCGTCTCCAAAACATCTCTTCCT
Band lengths:
146-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: