BtaEX6081965 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]
Coordinates
chr18:47700143-47716954:-
Coord C1 exon
chr18:47716868-47716954
Coord A exon
chr18:47715442-47715568
Coord C2 exon
chr18:47700143-47702849
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTATTATGTTTCTGTTTCAGAGA
3' ss Score
11.45
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
CACTACCTTTTCCAGACTGTGCTTCTCTAAAATAGGAATCTAGAAGATGATCAATCATGTCTCACAGCTCTAAAAACCATGGCTCAG
Seq A exon
AGATCAGTGATGTTCAGGGATGTTGCCATTGACTTCTCTCAGGAAGAGTGGGATTGCCTGGACTCAGCTCAAAGAGATTTGTATAGAGATGTGATGTTGGAGAACTATAGTAACTTAGTGTCACTAG
Seq C2 exon
ACTTGCCCTCAAGGGGGGCAAACAAGCTCTTATCTCCAAAAAAGGACATTTATGAAACAGGATTATCCCAATGGGAAATGAGTGCCAGACTTGAAAACTGTGATCTTGAGAACTCTAGTTCCAGAGATCATTTGGAAGTCAAAGGCACATTGGAAAAGCAACAAGAAAATCAGGCATATTTCAGTCAAGGAATGATCATATATGACAACATGTCTATTTTCAACCAGCATGCTTATTTATCTCAACATCCCAGGTGTCATTCTACTGAGAAACCCTATAAATGTAAGGAATGTGGGAAGGCCTTTAGACGAGCCTCACACCTAACTCAACATCAGAGTATTCATACTGGTGAAAAACCCTATGAATGTAAGCAATGTGGGAAGGCCTTTAGTCGTGATTCACAGCTCAGTCTTCATCAGAGACTTCATACTGGTGAGAAACCCTATGCATGCAAGGAATGTGGGAAGGCCTTTACTCAGAGCTCCCAACTTATTTTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038050-'3-6,'3-3,4-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF097235=Zn-ribbon_8=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTTCCAGACTGTGCTTCT
R:
TGTTGCTTTTCCAATGTGCCT
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]