BtaEX6081975 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr18:47868199-47873261:+
Coord C1 exon
chr18:47868199-47868281
Coord A exon
chr18:47871977-47872103
Coord C2 exon
chr18:47873185-47873261
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACGTGTATTTATGGTTTCAGGGA
3' ss Score
7.75
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTCTGGGTTTTCTGGACTCGGCTTTTCTGATAGAGAAGCCCAGAGGACTGATCAGCTCTTACAGGTCTAAAACCATGGCCCAT
Seq A exon
GGATCGTTGACATTCAGTGATGTGGCCATAGGATTCTCTCAGCAGGAGTGGGAATGCCTGGACCCTGTTCAGAAGACTTTGTACCGGGATGTGATGATGGAGAACTATGGTAACTTGGTCTCATTGG
Seq C2 exon
CAGGCCATTCCATTTCTAAGCCAAATGTAATTACCTTACTGGAGCAAGGAAAAGAGCCCTGGCTAGTTGTGAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046367-'1-3,'1-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTTCTGGACTCGGCTTT
R:
TCTCTCACAACTAGCCAGGGC
Band lengths:
155-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]