HsaEX0074028 @ hg19
Exon Skipping
Gene
ENSG00000198182 | ZNF607
Description
zinc finger protein 607 [Source:HGNC Symbol;Acc:28192]
Coordinates
chr19:38198815-38202593:-
Coord C1 exon
chr19:38202511-38202593
Coord A exon
chr19:38200597-38200723
Coord C2 exon
chr19:38198815-38198913
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACATGGGTTTGCTGTTTCAGGGA
3' ss Score
8.9
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTCTTGGTTCTTTTGACTTTGCTCTTCTGGTAGAGAAACGCCAAGGACTGATCAACTCTTGCCAGTCTCAAACCATGTCCTAT
Seq A exon
GGATCAATAACATTCGGGGATGTGGCCATAGACTTCTCTCATCAGGAGTGGGAATATCTCAGCCTGGTTCAGAAGACCTTGTACCAGGAGGTGATGATGGAGAACTATGACAACTTAGTCTCATTGG
Seq C2 exon
CAGGACATTCCGTATCTAAGCCAGATTTAATCACCTTATTGGAGCAAGGAAAAGAGCCATGGATGATTGTGAGGGAAGAAACAAGAGGAGAGTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198182-'1-2,'1-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGGTTCTTTTGACTTTGCTCT
R:
ACACTCTCCTCTTGTTTCTTCCC
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)