BtaEX6082345 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005261 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr18:49747873-49750563:-
Coord C1 exon
chr18:49749971-49750563
Coord A exon
chr18:49748177-49748771
Coord C2 exon
chr18:49747873-49748072
Length
595 bp
Sequences
Splice sites
3' ss Seq
CGGCCTGTCCTGCCTCCCAGGTG
3' ss Score
10.61
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
Exon sequences
Seq C1 exon
TCGAATGCAAAGAGGGCTGCGTGTGTGACGAGGGCTTCGTGCTCAACGGTGAGTCCTGCGTGCCGCTGGCCTCCTGCGGCTGCGTGTACCAGGGCTCCTACTACCCGCCCGAACAGACCTTCTACCCGGGACCCGAGTGCGATTCCCTTTGCTACTGCGAGGAGGGCGGGCTGGTGTCCTGTGTGCCGTCCAGCTGTGGCCCTCACGAGGCCTGCCAGCCGTCCAATGGCGTCCTGGGCTGCGTGGCTGTGGGCTCTACCACCTGCCAGGCATCCGGAGACCCCCATTACACCACCTTCGACGGCCAACGCTTCGACTTCATGGGTACCTGCGTGTACGTCCTGGCTCAGACCTGTGGGACTCGGCCTGGCCTGCCCCAGTTTGCTGTCCTGCAGGAGAATGTGGCCTGGGGCAACGGGAAAGTCAGTGTGACCAAGGCGATCACCGTGCAGGTGGCCAACTTCACCCTGCGGCTGGAGCAGAATCAGTGGAAAGTCACG
Seq A exon
GTGAACGGCGTGGACAGGAGGCTGCCCGTGCTGCTGGACGAGGGCCGGATCCACGTCTTCCAACACGGCTCAGACGTCGTGATCGAGACTGACTTCGGCCTGCGTGTGGCCTACGACCTCGTGTACAACGTGCGGGTCACTGTCCCAGGCAACTACTACCAACAGCTGTGTGGCCTGTGTGGGAACTACAACGGCAACCCCAAGGACGACTTCCAGAAGCCGGATGGCTCACAGGCGGGCAGCGCCAATGAGTTTGGCAACTCCTGGGAGGAGGCGGTGCCCGACTCACCCTGCCTGCCGCCCCCCACCTGCCAGCCGGGTGACAAGGACTGTGACACGGAGCTGGAGTGTAAACCCGAGCTGCAGAACAAATACGAGCAGCAGGAGTTCTGCGGGCTCCTCACCAGCCCCACAGGGCCCCTGGCCGCCTGCCACAAGCTCCTGGACCCCCAGGGCCCCTTGCAAGACTGTGTCTTTGACCTCTGCGTGGGCGGTGGCAACGAAAGCATTCTCTGCAGCAACATCCACGCCTATGTGAGTGCCTGCCAGGCAGCTGGAGGCCACGTGGAACCCTGGAGGACCGAGTCTTTCTGTC
Seq C2 exon
CCATGCAGTGCCCCCCCAACAGCCACTACGAGGTCTGCGCAGACACCTGCTCCCTGGGCTGCTCGGCACTCAGCGCCCCCCCACAGTGCCCAGAGAGGTGCGCCGAGGGTTGCCAGTGTGACTCCGGCTTCCTCAGTGACGGCCAAGGCTGCGTGCCCATCCAGGAGTGCGGCTGCTACCACAATGGCATCTACTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005261-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.3),PF0009420=VWD=PU(50.0=39.4)
A:
PF0009420=VWD=PD(48.7=38.2),PF087426=C8=WD(100=38.2)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(19.3=16.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGTCCTGGCTCAGACCT
R:
AGATGCCATTGTGGTAGCAGC
Band lengths:
358-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]