MmuEX6009331 @ mm9
Exon Skipping
Gene
ENSMUSG00000047730 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:MGI Symbol;Acc:MGI:2444336]
Coordinates
chr7:28876484-28879218:+
Coord C1 exon
chr7:28876484-28877076
Coord A exon
chr7:28878334-28878916
Coord C2 exon
chr7:28879019-28879218
Length
583 bp
Sequences
Splice sites
3' ss Seq
TGTCATTCTCTGCCTCACAGGTG
3' ss Score
10.93
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
Exon sequences
Seq C1 exon
CAGAATGCCGAGAGGGCTGTGTTTGTAATGAGGGCTTTGCCCTCAGTGGTGAGTCTTGTGTGCCTTTGGCCTCCTGCGGCTGTGTACACGAGGGCGCCTATCACGCACCAGGAGAAACCTTCTATCCTGGACCTGGATGCGATTCTCTTTGCCACTGTGAGGAAGGTGGCCTGGTTTCCTGCGAGCCCTCATCTTGCGGCCCACAGGAGGCCTGCCAACCATCCAATGGAGTCCTGGGGTGTGTGGCTGTGGGCACTACTACCTGCCAGGCATCAGGAGACCCTCATTACGTCACCTTTGACGGCCGCCGCTTTGACTTCATGGGCACCTGTGTGTATGTGCTAGCGCAAACCTGTGGAAACCGGCCTGGTCTACACCAGTTCACTGTCCTGCAGGAGAATGAGGCCTGGGGTAATGGGAAAGTCAGTGTGACCAAGGTGATCACCGTCCTGGTGGCCAACTACACCCTGCGCCTGGAGCAGAGTCAGTGGAAGGTCAAG
Seq A exon
GTGAACGGTGTGGACACGAAGCTGCCTGTGATGCTGGATGGAGGCAAGATCCGAGTCTCCCAGCACGGGTCCGACGTCGTGATTGAAACCGACTTTGGCCTGCGTGTGGCCTATGACCTTGTGTACTATGTTCGGGTAACCATCCCAGGCAACTACTACAAGCAGATGTGTGGTCTGTGCGGGGATTACAACGGGGACCCCAAGGACGACTTCCAGAAGCCCGACGGCTCTCAGACAACAGACCCCAGTGACTTTGGTAACTCCTGGGAGGAAGCTGTGCCCGACTCCCCCTGCGCACCAGTGCCTCCCTGCACAGGAGATGACTGTGACACCGAGTGCAGCCCCGAGCTGCAGGACAAATATCATGGGGAGCAGTTCTGCGGGCTGCTCACCAGCCCCACAGGGCCACTGGCTGCCTGCCACAAGCTGCTAGACCCCCAGGGTCCCTTACAAGACTGTGTCTTTGATCTCTGCCTGGGTGGCGGAAACCAGAGCATTCTCTGTAACATCATCCATGCCTACGTGAGCGCCTGCCAGGCGGCTGGGGGGCAAGTGGAGCCATGGAGGACGGAAACTTTCTGTC
Seq C2 exon
CAATGGAGTGCCCCCCTCACAGCCACTATGAGGTCTGTGCAGACACTTGCTCCCTGGGCTGCTGGGCTCTGAATACACCCCAGCAGTGCCCAGAAGGGTGTGCTGAGGGCTGTGAATGTGACTCTGGCTTCCTGTACAACGGCAAAGCCTGCGTGCCCATCGAGCAATGTGGCTGCTACCACAATGGGGTCTACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047730-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.3),PF0009420=VWD=PU(50.0=39.4)
A:
PF0009420=VWD=PD(48.7=39.0),PF087426=C8=WD(100=39.0)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(17.9=14.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCATCAGGAGACCCTCAT
R:
GTCACATTCACAGCCCTCAGC
Band lengths:
356-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: