GgaEX6046220 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:14289504-14290857:-
Coord C1 exon
chr9:14290574-14290857
Coord A exon
chr9:14290197-14290474
Coord C2 exon
chr9:14289504-14289949
Length
278 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTGCCTCACTATAGCTG
3' ss Score
8.69
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GTCAACGGCGAGCCAGAGGTGCTGCCCTGCACCCCATCTGTGGGCGTGCAAGTCTCGTCCAGCGGGTTCTACACCATGGTGACAACAGACTTTGGCTTGAGAGTGAAGTTTGATGGGAACCATCGGGTGGAGGTGACGCTTCCAAGCACCTTTGGGCAGAAGGTTTGTGGCATGTGTGGCAACTACAACGGGATGGCAGCAGACGACTTCCTGAACCCTGACGGGGTGCTGGAGCCAGACTCCACCAGCCTGGGTAACAGCTGGCAGGTGTCTAACGACAGCAG
Seq A exon
CTGCTCAGCTGGGATGCAGTCCCCGCCAGCCTGCACTGAAACGGACAAGCAAGTCATTGCCAGCAGCAACTTCTGTGGGCTCCTCACGGACACCAGCGGCCCGTTTGAGGTGTGCCATGCCGTGCTGAGTGCCAGCGGTTACTTCGACACGTGCCTGTATGACCTGTGTGAGCTGGGGCTTGATCGCGAGGCGCTGTGCAACAGCTTGCAGTCCTATGCAGATGCCTGCCAGGCGCTTGGTGTCCAGATCCCTGTGTGGAGGAACGCAACATTCTGCC
Seq C2 exon
CCATCACATGCCCAGCCAACAGCCACTACGAGCCCTGTGCTGCAGCTTGCCCTGCTACGTGTGTTAGCCCAACGGCACCATATAACTGCAGCTTGCCGTGCGTGGAGGGATGTGTATGCGACAGCGGGTACCTGCTCTACAACAGTCAGTGTGTGCCCATCCAGCAGTGTGGGTGCTGGCACAACGGGCAGCACTACCCGGTGGGCTCAGAGTTCTGGACGGACAACACCTGCTCGTCCAAGTGCACATGTCCCACGCGAGGAGGCAAAGTCCAGTGCTCCAGTGCATCGTGCCCTGCTGGCCAGTTCTGTGGTGTGCAGAATGGGAAACCCGAGTGCCTGGAACACTCCTACGGCATCTGTCACGTCCACGGGGACCCTCACTACAACACCTTTGACAAGGTGACGCACAACTTCATGGGGAACTGCACGTACACCCTGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(47.8=78.9)
A:
PF087426=C8=WD(100=79.8)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=36.2),PF127142=TILa=WD(100=38.3),PF0009420=VWD=PU(18.1=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTTTGGGCAGAAGGTTT
R:
ATGGGCACACACTGACTGTTG
Band lengths:
299-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]