BtaEX6110576 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36378493-36380964:-
Coord C1 exon
chr25:36380870-36380964
Coord A exon
chr25:36380395-36380571
Coord C2 exon
chr25:36378493-36378701
Length
177 bp
Sequences
Splice sites
3' ss Seq
TACCTCGTTTCATCCACCAGGAC
3' ss Score
8.38
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTGCTTTGCTGCAGATGCCAGGCCCCCCAGGTGCCTGGAAAAGAATGCAACTGACCCCTGGAGTAAGAACTGTGATATCTTAGTGAATCCTCAGG
Seq A exon
GACCCTTCTCCACATGCCACAGGGTGGTGTCCCCGCAGGCCAGCTTCGCCAGCTGTGTGTACGGCCAGTGTGGGACCAAGGGCGATGCCTTCACCCTGTGCCGCTCCCTGCAGGCCTACGCGTCCCTGTGTGCCCGTGCCGGCCAGGTCCTCACCTGGCGGAGCAGCACCTTCTGCC
Seq C2 exon
CTCTGAAGTGCCCGTCAGGCAGCAGATACAGCCCCTGCGCCGACCCCTGCCCGGGCACCTGTCTCAGCCTGAGCACCCCGTCGTACTGCCCGTCTTCACTGCCCTGTGCCGAGGGCTGTGAGTGTCAGAGAGGCCACATCCTGAGTGGGACCACCTGTGTGCCCCTCAGCGAGTGTGGCTGCACCAGCCCTGGGGGCGCCTACCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(20.0=45.5)
A:
PF087426=C8=FE(78.7=100)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.5=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTGCTGCAGATGCCAG
R:
AGGTGGTCCCACTCAGGATG
Band lengths:
250-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]