MmuEX6021808 @ mm10
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137438440-137443976:-
Coord C1 exon
chr5:137443882-137443976
Coord A exon
chr5:137442027-137442203
Coord C2 exon
chr5:137438440-137438645
Length
177 bp
Sequences
Splice sites
3' ss Seq
CACTTTATCTTGTCCTTCAGGGC
3' ss Score
10.42
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTGCTTTCTAGTCGGGGGCAAGCCCTCCCGCTGCGCGGACAGCGACATGGATGATGTCTGGACTAAGAAATGTGCCATCTTGATGAACCCTCTTG
Seq A exon
GGCCTTTCTCCAATTGCCACGAGGCGGTGCCCCCGCAGGCCAGCTTCTCCAGTTGTGTGTATGGCCAGTGTGAGACCAACGGAGACAACCTAACCCTCTGCCACTCCCTGCAGGCCTATGCATCTCTGTGTGCCCAGGCCGGCCAGGTGACTACCTGGCGCAACAGCACCTTCTGCC
Seq C2 exon
CTATGAGGTGCCCACCTAGGAGCAGCTACAACCCATGTGCCAACTCCTGCCCAGCCACCTGCCTTACCCTGAGCACCCCAAGAGACTGTCCAACGCTGCCCTGTGTAGAGGGCTGTGAATGCCAGAGTGGCCACATCCTGAGTGGAACCACCTGTGTGCCCCTCAGACAGTGTGGCTGCAGTGACCAGGACGGCTCCTATCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(18.9=42.4)
A:
PF087426=C8=FE(79.7=100)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=79.7),PF127142=TILa=PU(17.5=14.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTAGTCGGGGGCAAGC
R:
CACACAGGTGGTTCCACTCAG
Band lengths:
250-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types