HsaEX7004293 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100769880-100773493:+
Coord C1 exon
chr7:100769880-100769974
Coord A exon
chr7:100771844-100772020
Coord C2 exon
chr7:100773285-100773493
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGCCTTCTCTCTTCCTGCAGGAC
3' ss Score
13.93
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTGTTTCCTTGTGGGTGGCAAGCCCTCCAGCTGCCAGGAGAACAGCATGGCAGACGCCTGGAACAAGAACTGTGCGATCTTAATAAACCCTCAGG
Seq A exon
GACCCTTCTCTCAATGTCACCAGGTGGTGCCTCCCCAGTCCAGCTTTGCCAGTTGCGTGCATGGTCAGTGTGGGACCAAGGGCGACACCACAGCCCTGTGCCGCTCCCTGCAGGCCTACGCGTCCCTGTGTGCCCAGGCTGGCCAGGCCCCTGCCTGGCGGAACAGAACCTTCTGCC
Seq C2 exon
CTATGAGGTGCCCACCTGGCAGCAGCTACAGCCCCTGCAGCAGCCCCTGCCCAGACACCTGCAGCAGCATAAACAACCCGAGGGACTGCCCCAAAGCACTGCCCTGTGCTGAGAGCTGTGAATGTCAGAAAGGCCACATCTTGAGTGGAACCTCCTGCGTGCCCCTTGGCCAGTGTGGCTGCACTGACCCAGCGGGCTCCTACCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-'27-30,'27-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(20.0=45.5)
A:
PF087426=C8=FE(78.7=100)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.5=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCTTGTGGGTGGCAAG
R:
GGTTCCACTCAAGATGTGGCC
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains