GgaEX6046220 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NB86]
Coordinates
chr9:12680625-12682128:-
Coord C1 exon
chr9:12681845-12682128
Coord A exon
chr9:12681468-12681745
Coord C2 exon
chr9:12680625-12681220
Length
278 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTGCCTCACTATAGCTG
3' ss Score
8.69
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GTCAACGGCGAGCCAGAGGTGCTGCCCTGCACCCCATCTGTGGGCGTGCAAGTCTCGTCCAGCGGGTTCTACACCATGGTGACAACAGACTTTGGCTTGAGAGTGAAGTTTGATGGGAACCATCGGGTGGAGGTGACGCTTCCAAGCACCTTTGGGCAGAAGGTTTGTGGCATGTGTGGCAACTACAACGGGATGGCAGCAGACGACTTCCTGAACCCTGACGGGGTGCTGGAGCCAGACTCCACCAGCCTGGGTAACAGCTGGCAGGTGTCTAATGACAGCAG
Seq A exon
CTGCTCAGCTGGGACGCAGTCCCCGCCAGCCTGCACTGAAACGGACAAGCAAGTCATTGCCAGCAGCAACTTCTGTGGGCTCCTCACGGACACCAGCGGCCCGTTTGAGGTGTGCCATGCCGTGCTGAGTGCCAGCGGTTACTTCGACACGTGCCTGTATGACCTGTGTGAGCTGGGGCTTGATCGCGAGGCGCTGTGCAACAGCTTGCAGTCCTATGCAGATGCCTGCCAGGCGCTTGGTGTCCAGATCCCTGTGTGGAGGAACGCAACATTCTGCC
Seq C2 exon
CCATCACGTGCCCAGCCAACAGCCACTACGAGCCCTGTGCTGCAGCTTGCCCTGCTACGTGTGTTAGCCCAACGGCACCATATAACTGCAGCTTGCCGTGCGTGGAGGGATGTGTATGCGACAGCGGGTACCTGCTCTACAACAGTCAGTGTGTGCCCATCCAGCAGTGTGGGTGCTGGCACAACGGGCAGCACTACCCGGTGGGCTCAGAGTTCTGGACGGACAACACCTGCTCGTCCAAGTGCACATGTCCCACGCGAGGAGGCAAAGTCCAGTGCTCCAGTGCATCGTGCCCTGCTGGCCAGTTCTGTGGTGTGCAGAATGGGAAACCCGAGTGCCTGGAACACTCCTACGGCATCTGTCACGTCCACGGGGACCCTCACTACAACACCTTTGACAAGGTGACGCACAACTTCATGGGGAACTGCACGTACACCCTGGCCAAAGTGTGCTCCAACACCTCTGTGCCGTACTTCAACGTTGAGGCAAAGAACGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=78.9)
A:
PF087426=C8=WD(100=79.8)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.1),PF127142=TILa=WD(100=28.6),PF0009420=VWD=PU(50.0=39.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTTTGGGCAGAAGGTTT
R:
ATGGGCACACACTGACTGTTG
Band lengths:
299-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]