RnoEX6001883 @ rn6
Exon Skipping
Gene
ENSRNOG00000042899 | Fcgbpl1
Description
Fc fragment of IgG binding protein-like 1 [Source:RGD Symbol;Acc:1311906]
Coordinates
chr1:85075041-85078815:+
Coord C1 exon
chr1:85075041-85075633
Coord A exon
chr1:85077947-85078532
Coord C2 exon
chr1:85078616-85078815
Length
586 bp
Sequences
Splice sites
3' ss Seq
TGGCGGTCCCTGACTCCCAGGTG
3' ss Score
7.09
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
Exon sequences
Seq C1 exon
CAGATTGTTATGAGAGCTGTGTCTGTGATGAGGGCTTTGTCCTGAGCGGTGAGATCTGTATACCCCTGTCATCCTGTGGTTGCGTGTACCAGGGCATCTACCATGCGCCAGGAGATGACTTCTATCCTGGCCCTGAGTGTAACTCCCTCTGCCACTGTAATAAGGGCGGCCTGGTGTCTTGTCAGCCCTCATATTGCGGCCCACATGAAGTCTGTAAAGTGATAGATGGCATCCTGAGATGTGTGGGGGTGGGCTCTGCCACCTGCCATGTGTCAGGGGCTTCACACTACACTACCTTTGATGGCCGCCGCTTCGACTTCATGGGCACCTGTGTGTACGTGCTGGCTCAAACCTGCTGGACCCAGCCTGGCCTGCAACCGTTCACAATACTGCAGGAGAATGTAGTCCGGGGCGACAAGCAAATCAGTGTGACCAAGATGATCACCATCGAGGTGGCCAACTACACCCTGCAGCTGGAGCAGAATCAGTGGAAGGTTAAG
Seq A exon
GTGAACGCTGTGTACATGAAGATGCCTGTGTCGCTGGATGGGGAGAGAGTGCAGGCCTTCCTGCATGGCACAGATGTGGTAATCAAGACCAAATTTGGCCTGCTCGTGTCCTACGACCTCAAATACAGCGTGCGTGTCACCGTCCCCCGCAACTACTATAAACACATGTGTGGCCTGTGTGGGGACTACAACAACAACCCCAAGAACGACTTCCAGAAGTCCGATGGCTCGCAGGCAGTCAGTCCCGGTGAGCTGGGGAAATCCTGGGAAAAAACTGTGCCGGGTTCCTCCTGCACACCCCGGCCAGCCTGCAAACCGGGGCAGGATTGCACCCCGAAGTGCTACCCAACCCTGGAAAGGAAGTACAGTGGGAACGAGTTCTGCGGACTGCTCACCAACCCCACAGGGCCACTGGCTGCCTGCCACAAGCTGCTGGACCCCCAGGGTCCCTTGCAAAACTGCGTCTTTGATCTCTGCCTGGGTGGCGGGAACCTGAGTATTCTCTGTAACAGCATCCACGCCTATGTGAGCGCCTGCCAGGAGGCTGGAGGCACTGTCAAGCCATGGAGAAACCAAACTTTCTGTC
Seq C2 exon
CGATGGAGTGCTCGCCTCACAGCCACTATGAGGTCTGCGCAGACACCTGCTCCCTGGACTGCTCAACAATTACCACTCCCATAAAGTGCCTGAAGACGTGTTCAGAGGGCTGCGAGTGTGACACTGACTTCCTGCAGAGCATCACAGCCTGTGTGCCCATGGAGAAATGCGGCTGCCATCATAACGGAGTCTACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042899-'6-7,'6-6,7-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.3),PF0009420=VWD=PU(50.0=39.4)
A:
PF0009420=VWD=PD(48.7=38.8),PF087426=C8=WD(100=38.8)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(17.9=14.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGGGGCTTCACACTACA
R:
CAGCCCTCTGAACACGTCTTC
Band lengths:
342-928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]