GgaEX1001760 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NB86]
Coordinates
chr9:12650157-12682657:-
Coord C1 exon
chr9:12682577-12682657
Coord A exon
chr9:12681845-12682128
Coord C2 exon
chr9:12650157-12650240
Length
284 bp
Sequences
Splice sites
3' ss Seq
CTGGGTTTCTGTCCTTCCAGGTC
3' ss Score
10.67
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCGATGTGACCCCAACACCAGGCGCCGGCACCACCACACCTGTGGCAGAAATAACCACACCAACACCACAGCCAGGCTCAG
Seq A exon
GTCAACGGCGAGCCAGAGGTGCTGCCCTGCACCCCATCTGTGGGCGTGCAAGTCTCGTCCAGCGGGTTCTACACCATGGTGACAACAGACTTTGGCTTGAGAGTGAAGTTTGATGGGAACCATCGGGTGGAGGTGACGCTTCCAAGCACCTTTGGGCAGAAGGTTTGTGGCATGTGTGGCAACTACAACGGGATGGCAGCAGACGACTTCCTGAACCCTGACGGGGTGCTGGAGCCAGACTCCACCAGCCTGGGTAACAGCTGGCAGGTGTCTAATGACAGCAG
Seq C2 exon
GACCATCAACACCAAAACCTGGGACACCCTTGCCAGACATCTCAACGCCGCCCCCACACCCAATAACAACCACACCAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208_MULTIEX1-2/4=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.021 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0009420=VWD=PD(48.4=78.9)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGTGACCCCAACACCAG
R:
CTGAGCTTGGTGTGGTTGTTA
Band lengths:
164-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]