MmuEX6009336 @ mm10
Exon Skipping
Gene
ENSMUSG00000078776 | 9530053A07Rik
Description
RIKEN cDNA 9530053A07 gene [Source:MGI Symbol;Acc:MGI:2442118]
Coordinates
chr7:28143832-28147515:+
Coord C1 exon
chr7:28143832-28144424
Coord A exon
chr7:28146621-28147206
Coord C2 exon
chr7:28147316-28147515
Length
586 bp
Sequences
Splice sites
3' ss Seq
TGGCATTCCCTGACTCCCAGGTG
3' ss Score
6.84
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
Exon sequences
Seq C1 exon
CAGATTGCTACGAGAGCTGTGTCTGTGATGAGGGCTATGTCCTTAGCGGTGAGGCCTGTGTACCCCTGGCATCCTGTGGTTGCGTATACCAGGGCATTTACCATGCGCCAGGTGATGAGTTCTATCCTGGCCCTGAATGTAACTCCCTCTGCCACTGTGATAAGGGTGGCCTGGTGTCTTGTCAACCCTCACACTGCAGCCCACATGAAGTCTGTAAAGTGTTGGATGGCATCCTGAGATGTGTGGGTGAGGGCTCTGCCACCTGTCAGGTATCAGGGGCTTCACATTACACTACCTTTGATGGCCGCCATTTTGACTTCATGGGCACCTGTGTGCACGTGCTGGCCCAGACCTGCTGGACCCGACCTGGCCTGAAACCATTCACAATACTGCAGGAAAACGCAGTCCAGGGCAACAAGCAAGTCAGTGTGACCAAGAAGATCACCATCGAGGTAGCCAACTACACCCTGCAGCTGGAGCAGAATCAGTGGAAGGTCAAG
Seq A exon
GTGAACGGTGTGGACATGAAGCTGCCTGTGTTGCTGGATGAGGATAGAGTTCAGGCCTTCCGGCATGGCACAGATATGGTAATCGAGACCAAATTTGGCCTGCTCGTGTCCTACGATCTCAAATACAGCGTGCGTGTCAAGGTTCCCCACAACTACTATAAACACATGTGTGGCCTGTGTGGGGACTACAATGATGACCCCAAGAATGACTTCCAGAAGTCCGATGGCTCACAGGCAGCCAGTTCCAATGAGCTGGGAGACTCCTGGGAAAAAGCTGTGCCAGGTTCTTCCTGCACACCGCGGCCTTCCTGCAAACCGGGACAGGCTTGCAGCCCGAAGTGCTACCCAACTCTGGAGAAGAAGTACCGCGGGAAAGAGTTCTGTGGGCTGATCACCAGCCCCACGGGGCCACTGGCTGCCTGCCACAAACTGTTGGACCCCCAGGGTCCCTTGCAAAGCTGTGTCTTTGACCTCTGCCTGGGTGGTGGGAACCAGAGCATTCTCTGCAGCAGCATCCATGCCTACGTGAGCGCCTGCCAGGCGGCTGGGGGCACTGTCAAGCCATGGAGAAACCAGACTTTCTGTC
Seq C2 exon
CAATGGAGTGCCCCCCTCACAGCCACTATGAGGTCTGCGCAGACACTTGCTCCCTGGACTGCTCAGCAATCACCACTCCTATGCAGTGCCTGACGCCATGTTCAGAGGGCTGTGAATGTGACACTGACTTCCTGCAGAGTATCACAACCTGTGTGCCCATGGAGAAATGTGGCTGCCACTACAACGGAGTCTACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078776-'25-26,'25-22,28-26=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.066 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.3),PF0009420=VWD=PU(50.0=39.4)
A:
PF0009420=VWD=PD(48.7=38.8),PF087426=C8=WD(100=38.8)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=13.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGATGTGTGGGTGAGG
R:
GTGATTGCTGAGCAGTCCAGG
Band lengths:
342-928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types