BtaEX6082457 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004757 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:50182245-50184421:+
Coord C1 exon
chr18:50182245-50182367
Coord A exon
chr18:50182903-50183067
Coord C2 exon
chr18:50184254-50184421
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCCCGTCCTCCCCAGCCC
3' ss Score
9.13
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGTGGATGAGTGCGCGACTCGAGGGCGCTGCCAGCACGGAGAGTGTGCAAACACGCATGGCGGGTACACTTGCGTTTGCCCCGACGGCTTTCTGCTCGACTCGTCCCGCAGCAGCTGCATCT
Seq A exon
CCCAACACGTGATCTCAGAGGCCAAGGGGCCGTGCTTCCGCGTGCTTCGAGATGGCGGCTGCTCACTGCCCATTCTACGCAACATCACCAAACAGATCTGCTGCTGCAGCCGTGTGGGCAAAGCCTGGGGCCGGGGTTGCCAGCTTTGCCCACCCTTCGGTTCAG
Seq C2 exon
AGGGTTTTCGGGAGATCTGCCCAGCCGGCCCTGGCTACCATTACTCGGCCTCCGACCTCCGCTACAACACCAGACCCCTAGGCCAGGAACCACCCCGAGTGTCCCTCAGCCAGCCCCGTGCCCCACCTTCCACCTCTCGACCACCCTCAGGTGAGCTGGTTTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004757-'17-15,'17-12,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.642
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(86.0=66.1)
C2:
PF0068312=TB=PD(11.6=9.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGAGAGTGTGCAAACAC
R:
TCCAGAAACCAGCTCACCTGA
Band lengths:
255-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]