DreEX6066932 @ danRer10
Exon Skipping
Gene
ENSDARG00000099137 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:49040362-49050965:-
Coord C1 exon
chr18:49050843-49050965
Coord A exon
chr18:49044801-49044965
Coord C2 exon
chr18:49040362-49040435
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTACTGTTTTCTGCCTATAGCGC
3' ss Score
9.53
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATATTAACGAGTGTTTGCAGCCGGGTTTCTGTGAAAACGGGAACTGTGTAAACACCCGAGGAAGCTACAGTTGTGTCTGCAATGAGGGATTCTTGCTGGACGCCTCTCATGGGATCTGCATCT
Seq A exon
CGCAGAAGGTGATCTCGGAGGAGAAGGACCAGTGTTTTCGGATCCTGAATCAGGGCGCCTGTTCTCTGCCCATCCTGAGAAACATCACCAAGCAGATCTGCTGCTGCAGTCGGGTGGGAAAAGCCTGGGGGAAAAAGTGCGAGTTATGCCCGTTCTTCGGCTCAG
Seq C2 exon
CTGCCTTCAAGGAGATCTGTCCTGCCGGACCGGGCTACCATTATTCAGCTTCGGCGGTCAAGATTAACCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099137-'5-8,'5-7,8-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(86.0=66.1)
C2:
PF0068312=TB=PD(11.6=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACGAGTGTTTGCAGCCGG
R:
CCTTTGGTTAATCTTGACCGCC
Band lengths:
194-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]