RnoEX6001813 @ rn6
Exon Skipping
Gene
ENSRNOG00000020871 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:RGD Symbol;Acc:1307033]
Coordinates
chr1:84139871-84141245:-
Coord C1 exon
chr1:84141123-84141245
Coord A exon
chr1:84140428-84140592
Coord C2 exon
chr1:84139871-84140020
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATTTCCTCCCACTCCCCCAGCCC
3' ss Score
8.36
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTGGATGAGTGCGCCACAGGTGGGCGTTGCCAACACGGAGAGTGTGCCAACACTCGTGGCGGGTACACGTGTGTATGTCCGGATGGTTTCCTCCTAGACTCTTCCCGCAGCAGCTGCATCT
Seq A exon
CCCAACACGTGATCTCGGAGGCAAAGGGGCCCTGCTACAGAGTGCTCCAAGATGGCGGATGCTCGCTGCCCATTCTTCGAAATATCACCAAACAGATCTGCTGCTGTAGCCGCGTGGGCAAGGCGTGGGGCCGAGGCTGCCAGCTCTGTCCACCTTATGGTTCAG
Seq C2 exon
AGGGTTTTCGGGAGATCTGTCCAGCTGGCCCTGGTTACCACTATTCAGCTTCTGACCTCCGCTACAACACCAGACCCCTAAACCCGGATCCACCTCGAGTGACTTTCAATCAGCCACGTGCTCCACCTGTCACTCTTAGGCCACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020871-'17-12,'17-11,18-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.627
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(86.0=66.1)
C2:
PF0068312=TB=PD(11.6=9.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAGTGCGCCAC
R:
GCACGTGGCTGATTGAAAGTC
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]