BtaEX6082462 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004757 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:50175410-50181150:+
Coord C1 exon
chr18:50175410-50175548
Coord A exon
chr18:50176038-50176147
Coord C2 exon
chr18:50180959-50181150
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCCCCTCCCACCCAGGCT
3' ss Score
7.67
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
CCTCCTGCAGGGTCCGGAGCTGCCGGCCCGAAAAGTGTGCAGGCCTTCAGCGTTGCCTGGCTCCAGGGCCCCCAGAGCTGCAGAGCGCCAGCCCCAGCGTGAGGAAGAGACAGGTGTCCCTTAACTGGCAGCCACTGAC
Seq A exon
GCTGCAGGAAGCCCGAGCCCTGCTGAGGCGACGGCGGCCCCGCGGGCCGGGGGCCCGGGCATTGCTGAGAAGGAGGCCCCCACAGCGCGCCCCTGCCGGCCAGTCCCGGG
Seq C2 exon
TCCTGTGTCCCTTGATCTGTCACAATGGAGGAGTGTGCGTGAAGCCTGATCGCTGCCTCTGTCCCCCGGACTTCGCTGGCAAGTTCTGCCAGTTGCATTCATCGGGCGCCCGGCCCCCGGCCCCGGCCATGCCAGGCTTCACCCGCTCTGTGTACACCATGCCGCTGGCCAACCACCGCGATGATGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004757-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.632 C2=0.341
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF079748=EGF_2=WD(100=43.1)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCGTTGCCTGGCTC
R:
GTGTACACAGAGCGGGTGAAG
Band lengths:
252-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]