MmuEX0027280 @ mm9
Exon Skipping
Gene
ENSMUSG00000040488 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:MGI Symbol;Acc:MGI:1321395]
Coordinates
chr7:28115146-28120554:-
Coord C1 exon
chr7:28120416-28120554
Coord A exon
chr7:28119856-28119965
Coord C2 exon
chr7:28115146-28115337
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTCCACCCTCTTCCACCTAGTTT
3' ss Score
6.57
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
CTTCCTGCAGGGTCCGGAACTGCCCACCTGCCAAGTGCACAGGTCTAGAGGGGTGCCTGACCCCAACACCTTCGGTGCCCAGCCCCAGCCGCAGTCCCGTGGAGAAGAGTCAGGTATCCCTCAACTGGCAGCCACTGAC
Seq A exon
TTTGCAGGAGGCCCGAGCTCTGCTGAGGCAAAGGCGGCCCCGAGGGCCGTGGGCCCGGGCATTGCTGAAAAGAAGGCCCCCACATCGCGCCCCTGCCGGCCAGGCCCGGG
Seq C2 exon
TCCTATGTCCCTTGATCTGTCACAACGGTGGTGTGTGTGTGAAGCCTGATCGCTGCCTTTGCCCCCCGGACTTCGCTGGCAAATTCTGCCAATTGCATTCTTCGGGGGCCCGGCCCCCGGCCCCAGCCATGCCGGGCCTTACCCGCTCCGTTTATACAATGCCACTAGCCAACCACCGCGATGATGAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040488-'9-9,'9-2,10-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.404 A=0.658 C2=0.329
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF079748=EGF_2=WD(100=43.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTAGAGGGGTGCCTGACC
R:
TATAAACGGAGCGGGTAAGGC
Band lengths:
253-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types