RnoEX0051413 @ rn6
Exon Skipping
Gene
ENSRNOG00000020871 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:RGD Symbol;Acc:1307033]
Coordinates
chr1:84142520-84147893:-
Coord C1 exon
chr1:84147755-84147893
Coord A exon
chr1:84147222-84147331
Coord C2 exon
chr1:84142520-84142711
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTCTACCCCCTTCCGCCTAGTTT
3' ss Score
5.24
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
CTTCCTGCAGGGTCCGGAGCTGCCCACCCGGCAGGTGTACAGATCAACAGGGGTGCCTGACCCCAACACCTTCGGTGCCCAGCCCCAGCCGCAGTCCGGTGGAGAAGAGACAGGTATCCCTCAACTGGCAGCCACTGAC
Seq A exon
TTTGCAGGAGGCCCGAGCTCTGCTGAGGCAAAGGCGGCCCCGAGGGCCGTGGGCCCGGGCATTGCTGAAAAGAAGGCCCCCACATCGCGCCCCTGCCGGCCAGGCCCGGG
Seq C2 exon
TTCTATGTCCCTTGATCTGTCACAACGGTGGTGTGTGTGTGAAGCCTGACCGCTGCCTTTGCCCCCCGGACTTCGCTGGCAAATTCTGTCAATTGCATTCTTCGGGGGCCCGGCCCCCGGCCCCAGCCATGCCGGGCCTTACCCGTTCGGTTTACACAATGCCACTAGCCAATCACCGCGATGATGAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020871_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.632 C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF079748=EGF_2=WD(100=43.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCCAACACCTTCGGT
R:
GCATTGTGTAAACCGAACGGG
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]