BtaEX6082497 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046805 | CYP2F1
Description
cytochrome P450, family 2, subfamily F, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr18:50347067-50348830:-
Coord C1 exon
chr18:50348689-50348830
Coord A exon
chr18:50347737-50347924
Coord C2 exon
chr18:50347067-50347208
Length
188 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTCCCCCCACCCCAGTTC
3' ss Score
8.07
5' ss Seq
AGGGTGCAG
5' ss Score
-1.61
Exon sequences
Seq C1 exon
GAAAAGCAGGACCCGCTGAGCCACTTCTTCATGGATACTCTGCTGATGACCACACACAATCTGCTCTTCGGCGGCACTGAGACCGTGGGTACCACGCTGCGCCACGCCTTCCGACTGCTCATGAAGTATCCAGAAGTGCAAG
Seq A exon
TTCGAGTCCAGGAGGAAATCGACCGCGTGGTGGGACACGAGCGGCTGCCGACGGTGGAGGACCGAGCGGCGATGCCTTACACAGACGCGGTGATCCACGAAGTGCAGCGCTTCGCAGACGTCATCCCCATGAGCTTACCGCACCGTGTCACTCGGGACACGAACTTTCGAGGCTTCACGATACCCAGG
Seq C2 exon
GGCACAGATGTCATCACCCTCCTTAATACAGTTCACTATGACCCCAGCCAATTTCTGAAGCCCAAGGAATTCAACCCTGAACATTTTCTGGATGCCAATATGTCCTTCAAGAAGAGCCCTGCCTTCATGCCTTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046805-'4-9,'4-6,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
PF0006717=p450=FE(16.5=100)
C2:
PF0006717=p450=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAGCCACTTCTTCATGG
R:
GCAGGGCTCTTCTTGAAGGAC
Band lengths:
251-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]