RnoEX0025903 @ rn6
Exon Skipping
Gene
ENSRNOG00000032805 | Cyp2f4
Description
cytochrome P450, family 2, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:2476]
Coordinates
chr1:83943649-83946352:+
Coord C1 exon
chr1:83943649-83943790
Coord A exon
chr1:83944572-83944759
Coord C2 exon
chr1:83946211-83946352
Length
188 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCCTTCCACCTCCAGCCC
3' ss Score
10.44
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
GAGAAGCAAGACCCACTGAGCCACTTCAATATGGACACCCTACTGATGACCACACACAACCTGCTCTTTGGTGGAACGGAGACTGTGGGCACCACTTTACGCCATGCCTTCCTCATTCTTATGAAGTACCCCAAAGTGCAAG
Seq A exon
CCCGTGTGCAGGAAGAGATTGATTGTGTGGTGGGACGTTCGCGGATGCCCACGCTGGAGGACCGTGCATCCATGCCTTACACAGACGCGGTGATCCACGAAGTGCAGCGCTTTGCAGACGTCATCCCCATGAACCTGCCCCACCGCGTCATTCGGGACACACCTTTCAGGGGCTTCCTGATACCCAAG
Seq C2 exon
GGCACAGATGTCATCACGCTCCTTAACACCGTGCACTATGACTCCGACCAATTCAAGACCCCTCAGGAGTTCAATCCTGAGCATTTTCTGGATGCCAATCAATCCTTCAAGAAGAGCCCCGCCTTCATGCCATTTTCGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032805-'12-11,'12-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(13.5=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACCCACTGAGCCACTTC
R:
CGGGGCTCTTCTTGAAGGATT
Band lengths:
257-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]